PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00040.1_g00043.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CO-like
Protein Properties Length: 375aa    MW: 42777.4 Da    PI: 7.6869
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00040.1_g00043.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.3e-061963442
                 zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                             r C+++ +   + +C+ ++ +lC +C  + H+       H++vp+
  Rsa1.0_00040.1_g00043.1 19 RACDTCRSTICTVYCHADSAYLCTSCDAQVHSAnrvasrHKRVPV 63
                             78******99*********************66889999*99986 PP

2zf-B_box32.42e-1060106242
                 zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                              + ++C+ +e+ ++ + Ce +++ lC  C +e H+       H++vp+
  Rsa1.0_00040.1_g00043.1  60 RVPVCESCERAPAAFMCEADDVSLCTACDSEVHSAnplarrHQRVPV 106
                              5689*****************************66899999*99986 PP

3CCT64.82.5e-22299342144
                      CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                              Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR++GrF+k +
  Rsa1.0_00040.1_g00043.1 299 REARVLRYREKRKRRKFEKTIRYASRKAYAERRPRINGRFAKMS 342
                              9****************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.5191663IPR000315B-box-type zinc finger
SMARTSM003365.1E-101663IPR000315B-box-type zinc finger
CDDcd000213.30E-71963No hitNo description
PROSITE profilePS5011911.60459106IPR000315B-box-type zinc finger
PfamPF006431.4E-860106IPR000315B-box-type zinc finger
CDDcd000213.77E-862106No hitNo description
SMARTSM003362.4E-1164106IPR000315B-box-type zinc finger
PfamPF062031.4E-16299340IPR010402CCT domain
PROSITE profilePS5101716.281299341IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009909Biological Processregulation of flower development
GO:0010018Biological Processfar-red light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MLKQESNNIS NRDNNRGARA CDTCRSTICT VYCHADSAYL CTSCDAQVHS ANRVASRHKR  60
VPVCESCERA PAAFMCEADD VSLCTACDSE VHSANPLARR HQRVPVVPIT GNSCSSLATP  120
HHTSVTEPEK RAVLVQDDRE GKEDAKETAS WVFPYSDKVN HNNNNQNNEL LFSDDYLDLA  180
DYNSSMDYKF TGDYNQHQHK QDCTVPQTNY GGDRVVPLQL EETRGNLRHK QQNITYGSSG  240
SQYNYNGSIN HNANNPSMQT DFVPEPTARV TTASHQKTPK ETIHQPPEPL VQMLSPMDRE  300
ARVLRYREKR KRRKFEKTIR YASRKAYAER RPRINGRFAK MSETEVEDQE FNTMLMYHDT  360
GYGIVPSFYG KNKEY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308313KRKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6133260.0FJ613326.1 Sinapis alba constans mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013720877.10.0PREDICTED: zinc finger protein CONSTANS-like
SwissprotQ390570.0CONS_ARATH; Zinc finger protein CONSTANS
TrEMBLQ9FUZ50.0Q9FUZ5_BRANI; Constans-like protein
STRINGBra008669.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21282670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15840.11e-163B-box type zinc finger protein with CCT domain